PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G196400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bHLH

Protein Properties

Length: 109aa MW: 12169 Da PI: 9.8838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G196400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.4	7.2e-05	42	90	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +e+ RR ++ ++e Lr+l+ +a + +K e L +A +YI Lq Brast08G196400.1.p 42 KEIKSGRRCVMRRKMEALRRLVAPA-EEEEEKDGVDELLIRAADYIVRLQ 90 677789****************7.6999999999********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.7E-5	47	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-6	48	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MVAHADISCC NAAVQQDPPR RATRAPSTSR NNSNKARNGG KKEIKSGRRC VMRRKMEALR 60 RLVAPAEEEE EKDGVDELLI RAADYIVRLQ VQVRAMQLMV DVLEHAKD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G196400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165541.1	1e-28	uncharacterized protein LOC109751039
TrEMBL	I1HLK1	6e-44	I1HLK1_BRADI; Uncharacterized protein
STRING	BRADI2G34890.1	9e-45	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Brast08G196400.1.p