PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G198800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 151aa    MW: 16596.5 Da    PI: 9.473
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G198800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.55e-202458135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+tt+Tp+WR+gp g+++LCnaCG++yrkk++
  Brast08G198800.1.p 24 CVECRTTTTPMWRSGPTGPRSLCNACGIRYRKKRR 58
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-161876IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.6771854IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-142058No hitNo description
Gene3DG3DSA:3.30.50.101.7E-152259IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
PfamPF003207.5E-182458IPR000679Zinc finger, GATA-type
CDDcd002021.46E-122459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDSPHHKVIG VAAAAAAESG RMCCVECRTT TTPMWRSGPT GPRSLCNACG IRYRKKRRQE  60
LGLDNKQLQS QPQQQQQQQE QHQHQQQEQQ QQQQEDHSEA TSAVKDSSSS NSKTSKLQVV  120
KKRRVSMGVE EAASLLMALS SSSTPTLLHG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G198800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506741e-108AK250674.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf93f15, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179907.11e-63GATA transcription factor 17-like
TrEMBLA0A3B5ZS133e-62A0A3B5ZS13_WHEAT; Uncharacterized protein
TrEMBLR7WBD73e-62R7WBD7_AEGTA; GATA transcription factor 22
STRINGEMT198125e-63(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.15e-19GATA transcription factor 23