PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G201700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 245aa    MW: 26467.9 Da    PI: 10.0376
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-1685132148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+e+d +l+ av+++G + W+ Ia+    gR  kqc++rw ++l
  Brast08G201700.1.p  85 KGTWTEEDDNILIAAVNEFGERKWAMIAKSYLPGRIXKQCRERWINHL 132
                         799*************************98777************996 PP
2Myb_DNA-binding54.82.1e-17138180145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++ WT+ Ed+ lvda+k  G++ W+ Ia++++ gR+++++k++w+
  Brast08G201700.1.p 138 KDVWTEAEDLELVDAHKTCGNR-WSVIAKRLP-GRSENSVKNHWN 180
                         578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.26680136IPR017930Myb domain
SuperFamilySSF466893.45E-2982179IPR009057Homeodomain-like
SMARTSM007171.2E-1484134IPR001005SANT/Myb domain
PfamPF002494.1E-1485132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2286137IPR009057Homeodomain-like
CDDcd001672.70E-1487132No hitNo description
PROSITE profilePS5129417.928137187IPR017930Myb domain
SMARTSM007176.6E-15137185IPR001005SANT/Myb domain
PfamPF002491.8E-15138180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-20138182IPR009057Homeodomain-like
CDDcd001677.63E-13141180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAAGHAFFMD LEQAAAMEKA AMGKYLSLAI PGHGGGVAGP NNSASPTTFG FGGGALPVAA  60
VTAPARAAPV VPGAGSNLED VERFKGTWTE EDDNILIAAV NEFGERKWAM IAKSYLPGRI  120
XKQCRERWIN HLHPNIKKDV WTEAEDLELV DAHKTCGNRW SVIAKRLPGR SENSVKNHWN  180
ATRRGLKARR LLKKRSSKRQ PCPGRLSHLA HYISTLYPPP PSAAAASLSP PLLPAQEHED  240
QLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-35821841102MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314583.16e-92transcription factor MYB73-like
TrEMBLA0A0Q3J3W11e-90A0A0Q3J3W1_BRADI; Uncharacterized protein
STRINGTRIUR3_11880-P11e-59(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-39myb domain protein 98