PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G201900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 252aa    MW: 27340.7 Da    PI: 8.8418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1683129248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g WT+eEd +l+ av+++G + W+ Iar    gR +kqc++rw ++l
  Brast08G201900.1.p  83 GTWTKEEDNILKAAVNEFGERKWAMIARSYLPGRIGKQCRERWINHL 129
                         79*************************98877************996 PP
2Myb_DNA-binding391.9e-12137177345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          WT+ Ed+  vda+++  +  W+ Ia+ ++ gR+++++k++w+
  Brast08G201900.1.p 137 VWTEAEDLEPVDAHRMCRNQ-WSVIAKQLP-GRSENSVKNHWN 177
                         7*****************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.4377133IPR017930Myb domain
SMARTSM007178.3E-1481131IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2681176IPR009057Homeodomain-like
PfamPF002496.6E-1483129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2183134IPR009057Homeodomain-like
CDDcd001671.63E-1484129No hitNo description
PROSITE profilePS5129412.22134184IPR017930Myb domain
SMARTSM007175.3E-8134182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-14135179IPR009057Homeodomain-like
PfamPF002497.3E-11137177IPR001005SANT/Myb domain
CDDcd001671.06E-8138177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAVGHAFFMD REQEAAMDKV AMGKYLSLGI SGLGGGAAGP NNSAAPATYR FGGGALPVDA  60
MTAPAPPPPG APGAVEDVEQ FNGTWTKEED NILKAAVNEF GERKWAMIAR SYLPGRIGKQ  120
CRERWINHLH TNIKNDVWTE AEDLEPVDAH RMCRNQWSVI AKQLPGRSEN SVKNHWNATR  180
RGLRARRLLK KRSSKHQPCP GRLSHLAHYI STLXPPPPSA TAASLSPPLL PVQEHEDQLQ  240
AQDGDGIISS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30831798103B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314583.16e-87transcription factor MYB73-like
SwissprotQ9S7L29e-34MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0Q3J3W11e-85A0A0Q3J3W1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-33myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]