PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G202600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ERF

Protein Properties

Length: 143aa MW: 15783.8 Da PI: 5.249

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G202600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	25.1	4.5e-08	8	54	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr ++ ++ I + r +rf+lg++ t+e a+a+++a+k l g Brast08G202600.1.p 8 RYKGVRLRS-ALNFL--IGLC-----RkTRFWLGTYSTEERTAQAYEEAAKMLSG 54 688888887.67788..5553.....34***********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	12.681	8	62	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-14	8	63	IPR001471	AP2/ERF domain
SMART	SM00380	9.5E-9	8	68	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-9	8	64	IPR016177	DNA-binding domain
Pfam	PF00847	1.8E-4	24	54	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MPKLQLERYK GVRLRSALNF LIGLCRKTRF WLGTYSTEER TAQAYEEAAK MLSGPATRTN 60 FPASVDCDWQ PAQSLSSSTA TMTAPILSSQ YGAKAPASSS TEARAATIMT EDEEFIEEMI 120 REMTHYGPIE FVPISSIRST TD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G202600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003579417.1	2e-30	ethylene-responsive transcription factor ERF003
TrEMBL	I1J2V3	6e-35	I1J2V3_BRADI; Uncharacterized protein
STRING	BRADI5G24710.1	1e-35	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1418	35	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25190.1	2e-12	ERF family protein

Link Out ? help Back to Top
Phytozome	Brast08G202600.1.p