PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G214800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 459aa    MW: 48045.4 Da    PI: 6.2631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G214800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.96.7e-17291337455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn+ ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  Brast08G214800.1.p 291 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 337
                         5*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-20285345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-20285345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-18290341No hitNo description
PfamPF000102.3E-14291337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLSEPGEELL WADDGPAAFR LPAPLFPPFA SAGPRPRPAL LAKHPAPPLD AMRGLLAVHE  60
DEDEDDEDAV PWLHFPAVGL DDGGGHGGVP LPPEYCSSPA LLPGYSAAAA GRDAGDAPAS  120
ASHGGAVAKQ QQPRPGGGEG VMNFTFFSRP LHRPPPPPVE SMSTAAVTTS RLRSTPLFSE  180
QRMAWLQPPP KVTPPAAAAP APAPAPLRHP EPAAPSTRLQ PEARAPEPPA PATATTSSVC  240
SDNGDRSQLK RSSHQAAAEW SLSQDDEDLD DEPGGLRRSS RSTKRGRTAE VHNMSERRRR  300
DRINEKMRAL QELIPNCNKI DKASMLEEAI EYLKTLQLQV QMMSSMGPAA AAGLCVPPML  360
AMQMPPMGMG MGMGMAHFHH HHLGAMGFGM GGAFDPRLAQ FPCGPMPASF PFPGAGHAMP  420
PFPQTAAAGA HFVVNNAGGG GGAQAEQTPG DVHPAAPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G214800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597001e-108AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.
GenBankAK3617091e-108AK361709.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146O18.
GenBankAK3765941e-108AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231744.20.0transcription factor APG
SwissprotQ6AT907e-72APG_ORYSJ; Transcription factor APG
TrEMBLA0A0Q3G8E80.0A0A0Q3G8E8_BRADI; Uncharacterized protein
STRINGBRADI2G36740.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-28phytochrome interacting factor 3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]