PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G215500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 224aa    MW: 24862 Da    PI: 9.1547
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G215500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.7e-141052244
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         ien+s+r++t+ +R++ ++KK +ELS+LC + ++++++ ++ 
  Brast08G215500.1.p 10 YIENDSKRKTTLKRRLKSLIKKVNELSILCRVMALLVVYRPDE 52
                        59************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.57E-15156IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-8160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.937148IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-7323IPR002100Transcription factor, MADS-box
CDDcd001201.09E-16353No hitNo description
PfamPF003194.1E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MPRGKVRIQY IENDSKRKTT LKRRLKSLIK KVNELSILCR VMALLVVYRP DEEQAVDKLK  60
NVLDGHGFLQ QQVDKERGKL QNLQWTAETK RYLHDLCVRR DSLKLQGLTL TPEIVGDLRN  120
LNLQVITEVQ CKLQSTLRAV SDRLKEKRSG STSAPLPEEV PMLAPVAPSA MVAPGAVPVE  180
PLAPPPTAPM VIYPPHVGDD APMTGIGGFS FDDLLSPEEL RDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026LKRRLKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G215500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233355.13e-71agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3MTE86e-70A0A0Q3MTE8_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2921224