PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G222600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 259aa    MW: 29080.4 Da    PI: 6.1805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G222600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.3e-151865148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed +lv  v++lG ++W+  a+  g++Rt+k+c++rw +yl
  Brast08G222600.1.p 18 KGPWTEQEDAQLVWFVRLLGERRWDFLAQVSGLRRTGKSCRLRWVNYL 65
                        79********************************************97 PP
2Myb_DNA-binding56.46.9e-1871115147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr+T+eE+ l+++++ q+G++ W++Iar+++ gRt++++k++w+++
  Brast08G222600.1.p  71 RGRMTAEEERLILQLHSQWGSR-WSRIARRLP-GRTDNEIKNYWRTL 115
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2531365IPR017930Myb domain
SuperFamilySSF466891.4E-2716112IPR009057Homeodomain-like
SMARTSM007174.5E-121767IPR001005SANT/Myb domain
PfamPF002493.5E-131865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-191972IPR009057Homeodomain-like
CDDcd001673.35E-72065No hitNo description
PROSITE profilePS5129423.55666120IPR017930Myb domain
SMARTSM007172.9E-1670118IPR001005SANT/Myb domain
PfamPF002491.1E-1571115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2373118IPR009057Homeodomain-like
CDDcd001675.15E-973112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MRDNSSKSGG KTAMMKRKGP WTEQEDAQLV WFVRLLGERR WDFLAQVSGL RRTGKSCRLR  60
WVNYLHPGLK RGRMTAEEER LILQLHSQWG SRWSRIARRL PGRTDNEIKN YWRTLTRKLT  120
KKTTTTATPE TEKKKDSSSP TASDSSSSSA SSSSSLTASA ETGCGTEEEM GGGTEEAGET  180
EEETTAASEK KPEKDMEMEE LWNEIAAAEM AAAAASWPGL HAEELLLPPS SPPAWEDYSL  240
WRIDDQEYYS KMEHAALR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25181184103MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-251811858157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-251811858157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25181184103C-Myb DNA-Binding Domain
1msf_C2e-25181184103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G222600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566622.11e-110transcription factor MYB59
TrEMBLI1HMC31e-109I1HMC3_BRADI; Uncharacterized protein
STRINGBRADI2G37377.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.31e-54myb domain protein 59