PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G222600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 186aa    MW: 20507.4 Da    PI: 4.4081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G222600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-16242547
                        -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        T+eE+ l+++++ q+G++ W++Iar+++ gRt++++k++w+++
  Brast08G222600.2.p  2 TAEEERLILQLHSQWGSR-WSRIARRLP-GRTDNEIKNYWRTL 42
                        9*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.756147IPR017930Myb domain
CDDcd001675.42E-9139No hitNo description
SMARTSM007176.0E-11145IPR001005SANT/Myb domain
PfamPF002491.2E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18242IPR009057Homeodomain-like
SuperFamilySSF466892.57E-13253IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTAEEERLIL QLHSQWGSRW SRIARRLPGR TDNEIKNYWR TLTRKLTKKT TTTATPETEK  60
KKDSSSPTAS DSSSSSASSS SSLTASAETG CGTEEEMGGG TEEAGETEEE TTAASEKKPE  120
KDMEMEELWN EIAAAEMAAA AASWPGLHAE ELLLPPSSPP AWEDYSLWRI DDQEYYSKME  180
HAALR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G222600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8295364e-41CT829536.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107P09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566622.18e-58transcription factor MYB59
TrEMBLI1HMC32e-56I1HMC3_BRADI; Uncharacterized protein
STRINGBRADI2G37377.13e-57(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.17e-18myb domain protein 59