PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast08G222700.3.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Protein Properties

Length: 450aa MW: 50282.5 Da PI: 5.0048

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast08G222700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.9	1.1e-10	350	418	31	99
.--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +es t+tle ++++W+ ++ +++++l+++W +F +n+++e D++vF ++ ++ +++v+++++ Brast08G222700.3.p 350 HESGTVTLEVpGKSEKWQPRF--FVEKDACMLAGNWLDFICDNQVQEEDICVFVPAKEeEKSKFMVHIISA 418 45669999995566*****..88888899*******************887779999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.59E-12	312	417	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-12	312	418	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.10E-11	318	417	No hit	No description
PROSITE profile	PS50863	8.727	319	419	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-8	349	418	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MKYYTAKWAS GAASVQRGFG ISCGVLHLDS RAVLTPTTGN TIDLDYLWAF EDMSAVQDLD 60 WAGHITEHLM EEVRKFQFKS REEKMTDFWV GGCLPLLMIA YMDHLDLPRG RIVDREINYS 120 IPRICHVSKD DFQFTAIADL NRQHYKFATF GILPFRDRTP YNDNPIIEET EVAEDDLHIP 180 SKDYVISGQW ELEAHEERIY ELGQGIQPEI LAFAEASIDN SLHGRNGVGS NQGSKRFASC 240 ERGSSSHCRN TAKAAVTTPS SEESGEHSAQ EYESSESDDH TTPPEADYGV IFRNCLSGAQ 300 IEKVNTLIRK VQPGTVVFVA TMRKCDVQLP SPLLIVSKER ALAAAARFPH ESGTVTLEVP 360 GKSEKWQPRF FVEKDACMLA GNWLDFICDN QVQEEDICVF VPAKEEEKSK FMVHIISAEA 420 TRSRGVKRAR SSHDSPVVVD EQTANPGVV*

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MKYYTAKWAS GAASVQRGFG ISCGVLHLDS RAVLTPTTGN TIDLDYLWAF EDMSAVQDLD  60
WAGHITEHLM EEVRKFQFKS REEKMTDFWV GGCLPLLMIA YMDHLDLPRG RIVDREINYS  120
IPRICHVSKD DFQFTAIADL NRQHYKFATF GILPFRDRTP YNDNPIIEET EVAEDDLHIP  180
SKDYVISGQW ELEAHEERIY ELGQGIQPEI LAFAEASIDN SLHGRNGVGS NQGSKRFASC  240
ERGSSSHCRN TAKAAVTTPS SEESGEHSAQ EYESSESDDH TTPPEADYGV IFRNCLSGAQ  300
IEKVNTLIRK VQPGTVVFVA TMRKCDVQLP SPLLIVSKER ALAAAARFPH ESGTVTLEVP  360
GKSEKWQPRF FVEKDACMLA GNWLDFICDN QVQEEDICVF VPAKEEEKSK FMVHIISAEA  420
TRSRGVKRAR SSHDSPVVVD EQTANPGVV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast08G222700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010231769.1	0.0	uncharacterized protein LOC100837372
TrEMBL	A0A0Q3G8G1	0.0	A0A0Q3G8G1_BRADI; Uncharacterized protein
STRING	BRADI2G37387.1	0.0	(Brachypodium distachyon)

Link Out ? help Back to Top
Phytozome	Brast08G222700.3.p