PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G232200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 589aa    MW: 62499.6 Da    PI: 8.249
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G232200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07250271526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ f+++G C+ Gd C +aHg
  Brast08G232200.1.p 250 PCPEFRKGGSCRKGDGCEYAHG 271
                         8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.55E-567145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.61267137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-968186IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.179102137IPR002110Ankyrin repeat
SMARTSM003565.0E-4245272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85245273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4250273IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4250271IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287281305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MCSGTRKPAA APPARDSAEL LMELAAADDV AGFRRAVEED KACLDGAGLW YGPSAAAAAG  60
GRRLGMESRT PAMVAALYGS TGVLAYALSA APREACRASP TDGATALHMA AAGGAAGAVA  120
AAHLLLAAGA STEALSASGS RAGDLLPRAA DKPLRVLLKS PAVSPSSSPK KSPSPPAMAA  180
QEPRKEYPPD LTLPDLKSGL FSTDEFRMYS FKVKPCSRAY SHDWTECPFV HPGENARRRD  240
PRRYSYSCVP CPEFRKGGSC RKGDGCEYAH GVFECWLHPA QYRTRLCKDE VGCARRICFF  300
AHKRDELRAV NPSAVSVGMQ PSSPRSSPPN GMDMGMLNTA WPSSPASSRL KTARELDFDL  360
EMLALDQYQQ KLFDKVSNAP SPRASWGAAS APPPRSMPDY SDLLGSMDTA MLSQLHALSL  420
KQAGDMSPYS SMPDTQLHMP TSPMVGANTS FGLDHSMAKA IMSSRASAFA KRSQSFIDRG  480
ARAPAARSLM SPATMGGEPS MLADWGSPGG SNLDWGSPSG KLDWGVQGDE LHKFRKSASF  540
GFRAQSAMPV ASQATQAEPD VSWVNSLVKD GHSGDHFAQW LEQEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast08G232200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545650.0AK354565.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569054.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R30.0C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLI1HMN10.0I1HMN1_BRADI; Uncharacterized protein
STRINGBRADI2G38247.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-117C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]