PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G003900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 165aa    MW: 18026.2 Da    PI: 9.514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G003900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-065375123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C++ F++   L  H+++H
  Brast09G003900.1.p 53 YTCGYCKREFRSAQALGGHMNVH 75
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.1E-65080No hitNo description
PROSITE profilePS5015711.5315380IPR007087Zinc finger, C2H2
PfamPF139124.6E-75377IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MESRSTTRSR SSGEHLQRHG GGQQQQQLRQ PWSYGVGCTG GVSWPAALQR SSYTCGYCKR  60
EFRSAQALGG HMNVHRRERA RLRHYYCSGG YPAAMTIHRQ QANPPPPLSP QHFTVVYSFF  120
SAAATTATTT TMTKDALMEV DLELGVGGFG RDGGLDLELR LGCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G003900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240689.15e-61transcriptional regulator SUPERMAN
TrEMBLA0A0Q3I5Q71e-66A0A0Q3I5Q7_BRADI; Uncharacterized protein
STRINGPavir.J31403.1.p8e-31(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.18e-18C2H2 family protein