PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G026300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 176aa MW: 18173.5 Da PI: 5.6697

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G026300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.1	1.3e-33	49	119	2	72
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++ +r+s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ s++++ Brast09G026300.1.p 49 RPRARRSSDRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVSPEEA 119 57899***********************************************************8877743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-26	55	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.717	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MMSSSPSELV LYNLVPTQTL NPTAPPPTTD DPAADLSIAT ATAAAPSARP RARRSSDRHA 60 KVAGRGRRVR IPAMVAARVF QLTRELGHRT DGETIEWLLR QAEPSIIAAT GTGVSPEEAP 120 PAAVPIGSAP AVHGAPFVQV PYYTALLMQP PTADEPPAAP AAADSASVTV AEENN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G026300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP092536	1e-113	FP092536.1 Phyllostachys edulis cDNA clone: bphylf049m10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581062.1	7e-96	transcription factor PCF1
Swissprot	O23875	2e-64	PCF1_ORYSJ; Transcription factor PCF1
TrEMBL	A0A0Q3E6C7	2e-94	A0A0Q3E6C7_BRADI; Uncharacterized protein
STRING	BRADI5G02880.1	3e-94	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14172	26	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Brast09G026300.1.p