PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G058200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 219aa    MW: 23393.6 Da    PI: 6.3465
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G058200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-121361934198
                         TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                  B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                          +grsWe+++  ++++    l +GW++F+ +n L+ gD +vF+l+ g+ ++  + v+v+r
  Brast09G058200.1.p 136 WQGRSWEMRF--TGGRPIQRLDAGWRSFAADNALRLGDGCVFELIsGDgEGVVFQVQVLR 193
                         589*******..88888899***********************99566566666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.6E-1597194IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-1497194IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-1298193No hitNo description
SMARTSM010190.0067100195IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182100195IPR003340B3 DNA binding domain
PfamPF023622.2E-9114189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MCRDHPLHLW MQDSECGLFR AEAVPAESST ATTPPLDPSH HCSQEPGGIA GVKDNAVPSP  60
AAGDSSQAAI AAGPPARPGN ARVEKMQQPR ILPLLGKPYF ACVVCRSHIQ PPFQVVVPRS  120
LAPFLPPKPA PATLTWQGRS WEMRFTGGRP IQRLDAGWRS FAADNALRLG DGCVFELISG  180
DGEGVVFQVQ VLRAEIPEGI RERAGGYNSS SPIVIEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G058200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751250.11e-119B3 domain-containing protein Os04g0386900
SwissprotQ7XLP43e-63Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0Q3H2F31e-117A0A0Q3H2F3_BRADI; Uncharacterized protein
STRINGMLOC_48372.12e-91(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]