PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G058200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 200aa    MW: 21067.9 Da    PI: 6.2577
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G058200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.7e-121171744198
                         TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                  B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                          +grsWe+++  ++++    l +GW++F+ +n L+ gD +vF+l+ g+ ++  + v+v+r
  Brast09G058200.2.p 117 WQGRSWEMRF--TGGRPIQRLDAGWRSFAADNALRLGDGCVFELIsGDgEGVVFQVQVLR 174
                         589*******..88888899***********************99566566666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-1578175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-1478175IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-1379174No hitNo description
SMARTSM010190.006781176IPR003340B3 DNA binding domain
PROSITE profilePS5086312.18281176IPR003340B3 DNA binding domain
PfamPF023621.8E-995170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAEAVPAESS TATTPPLDPS HHCSQEPGGI AGVKDNAVPS PAAGDSSQAA IAAGPPARPG  60
NARVEKMQQP RILPLLGKPY FACVVCRSHI QPPFQVVVPR SLAPFLPPKP APATLTWQGR  120
SWEMRFTGGR PIQRLDAGWR SFAADNALRL GDGCVFELIS GDGEGVVFQV QVLRAEIPEG  180
IRERAGGYNS SSPIVIEED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G058200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751250.11e-121B3 domain-containing protein Os04g0386900
SwissprotQ7XLP45e-64Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLA0A0Q3H2F31e-119A0A0Q3H2F3_BRADI; Uncharacterized protein
STRINGMLOC_48372.14e-93(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]