PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G063500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 324aa    MW: 34990.2 Da    PI: 8.4585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G063500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.17.3e-261993170
            trihelix  1 rWtkqevlaLiearremeerlr....r.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                        rWt+qe+l+Lie++r +e+r r    r ++++ ++W++v+ ++r++g+er+p+qC+++w+nl+++ykki+e+e++
  Brast09G063500.1.p 19 RWTRQEILVLIEGKRVVESRGRgrggRgAAAEPTKWAAVAGYCRRHGVERGPVQCRKRWSNLAGDYKKIREWERS 93
                        8*******************995333223699*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.471981IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.1E-51980IPR009057Homeodomain-like
PfamPF138372.8E-111992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSGAGEGSVG PGRAARLPRW TRQEILVLIE GKRVVESRGR GRGGRGAAAE PTKWAAVAGY  60
CRRHGVERGP VQCRKRWSNL AGDYKKIREW ERSLLLPPPP GPGPKEEAPS FWAMRNDARR  120
ERRLPGFFDR EVYDIIEGRA RNAAQLLVRA EEEKAQALVL DGGRAPEEGL FTSSSASSDA  180
GDDEASVAPV PPPAPPVLPS PASAPAVVAV TAPDKKNEAP TQDSSEKAAT SKGKQQEQII  240
DDPPPEQGGQ KRQRSDDTTG EATDLQGQLI EILDRSSRMV AAQLEAQNIN CQLDREQRKD  300
QVSSLLSVLG KVADALYRIA DKL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G063500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3622987e-81AK362298.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2004B10.
GenBankAK3677357e-81AK367735.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2061F21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579647.11e-144trihelix transcription factor ASR3 isoform X1
TrEMBLA0A0Q3E3I91e-143A0A0Q3E3I9_BRADI; Uncharacterized protein
STRINGBRADI5G08600.11e-141(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.15e-50Trihelix family protein