PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G080600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 240aa    MW: 24387.2 Da    PI: 8.2057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G080600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-2070119255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  Brast09G080600.1.p  70 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 119
                         8********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-3369128IPR001471AP2/ERF domain
SMARTSM003809.4E-3770133IPR001471AP2/ERF domain
PfamPF008473.9E-1470119IPR001471AP2/ERF domain
CDDcd000181.93E-2070128No hitNo description
PROSITE profilePS5103225.89770127IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2370128IPR016177DNA-binding domain
PRINTSPR003671.3E-117182IPR001471AP2/ERF domain
PRINTSPR003671.3E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLPPPTPTPA AGVFSEQALA AETAAIVSAL THVISSGRGP PCPAPPLAMP GAPASTEEPQ  60
GTAEPAPARK YRGVRRRPWG KWAAEIRDPQ KAARVWLGTF ATAEDAARAY DAAALRFRGS  120
RAKLNFPEDA AAATARRATD AAAAAAAAAS KPAALLESQH GDDVMDYLEY SRILEGTRPS  180
DFLLGGGGDG NGRFLGSWSI GTAPASSGSS DSLAGAGPAS APLFQCGGSG WKQSITQGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2366127163ATERF1
3gcc_A1e-2366127163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G080600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165912.12e-76ethylene-responsive transcription factor ERF115-like
TrEMBLA0A2K2CGC21e-79A0A2K2CGC2_BRADI; Uncharacterized protein
STRINGPavir.J15316.1.p2e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-24ERF family protein