PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G088600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 338aa    MW: 38845.2 Da    PI: 11.2887
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G088600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05281302326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          e Cr+f++   C + ++C+FaH+
  Brast09G088600.1.p 281 VEVCRDFLK-NMCTR-ESCRFAHP 302
                         699******.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.73299127IPR000571Zinc finger, CCCH-type
SMARTSM003560.061100126IPR000571Zinc finger, CCCH-type
PfamPF146080.096105125No hitNo description
SMARTSM003560.23134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836134161IPR000571Zinc finger, CCCH-type
PfamPF146083.4146159No hitNo description
PROSITE profilePS5010313.291176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.14177203IPR000571Zinc finger, CCCH-type
PfamPF146083.1182201No hitNo description
SMARTSM003562.4206231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.596206232IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-4278303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601278304IPR000571Zinc finger, CCCH-type
PfamPF146085.1E-4284302No hitNo description
PROSITE profilePS5010312.408310336IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037310335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4312333IPR000571Zinc finger, CCCH-type
PfamPF146080.017316334No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MASAEIPNSV TTDPNPARSP SPPLPPRKRR LSLSPSRSPA LSPRRSSSRS RSPRRERSRS  60
RSRSRSRSRS RSRSRNRTRS RSRSRSPRQP DGKRARHSDL TVEVCRDYLR DRCTRSDLEC  120
KYAHPHQSVS VDRDNKVTAC ADSLRNNCFR GRTCRYYHPP PHIQESLLRS IGVDAPPAKM  180
VCRDFARGRC SRSANECRFL HHSSVQESAI VCQDFLRGRC DRISCRYTHV IAQQMFPPPM  240
RDLPMQMQYP DMVYMPPPPL GVPMMVPPLS PPTTFADNRR VEVCRDFLKN MCTRESCRFA  300
HPDSRSEVLN DKVEVCRDFK RGECTRPSCR FFHPSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5u6h_A3e-151001671479Muscleblind-like protein 1
5u9b_A3e-151001671479Muscleblind-like protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17484RNRTRSRSRSR
27684RTRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G088600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579801.10.0zinc finger CCCH domain-containing protein 28
RefseqXP_024311274.10.0zinc finger CCCH domain-containing protein 28
SwissprotQ0JD071e-132C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLI1IXZ30.0I1IXZ3_BRADI; Uncharacterized protein
STRINGBRADI5G10750.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]