PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G092500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 658aa MW: 74543.6 Da PI: 7.269

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G092500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.3e-19	45	140	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+ +Ak++GFs+r+++++ + + t+r fvC + g++ + + k +r+r+++r+gC+a l++ ++ +w+vt ++++Hn Brast09G092500.1.p 45 EFYSGFAKQCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKPFSdGAKPQRNRKSSRCGCQAYLRIGRDAgagAPEWRVTGFSNQHN 135 6************9998877356667999*****998887664677889*************99877789******* PP FAR1 87 Helap 91 Hel p Brast09G092500.1.p 136 HELLP 140 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-16	45	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-12	261	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.249	536	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-6	549	576	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	2.8E-6	550	573	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MEGTSSGEEE EDYPNQKRLS METAGADDSA PYIGQRFLTH DAAYEFYSGF AKQCGFSIRR 60 HRTEGKDGVG KGLTRRYFVC HRAGNTPAKP FSDGAKPQRN RKSSRCGCQA YLRIGRDAGA 120 GAPEWRVTGF SNQHNHELLP LDQVRFLPAY RVISDSDRDR ILMFAKSGIS VQQMMRIMEL 180 EKFVEPGSLP FTEKDVRNLI LSFRRFDQEE ESVDLLRMCR NVKEKDPNFV YDFTKANDRL 240 ENIAWSYASS IQSYEIFGDA VIFDTNHRLT GLDMALGIWF GMNNYGMPCF FGCTLLREES 300 VHSFAWALQA FLNFVNRKAP LTILTDQNVY LKEAVEKELP NTKHALSILL IAARFPSWFS 360 AVLGKRYNDL KNEIYRLYSM ENTIDFDLGW SDMVNCYGLH GDRHIATLFA SRKHWALPYL 420 RGYFLAGLTA IPEVSNSINA FIQQFMRAQT CISHFVEQVA IVVDDKDQAV GQQIMQENPQ 480 TISLKTAAPM EAHAAAVLTP YAFSKLQDEL VAAAHYASFH LEGNAFLVRH RTKTEGRSSV 540 TWNQSEQLVS CSCQLFESSG ILCRHALLVL TTLNYLQIPD HYLPVRWRRT QSPPPNSLNG 600 IPDHGGASER VKALQSMVSA LVSEAAKSDE RIDLATQEIS DLLSRIRQQP VFRECFR*

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MEGTSSGEEE EDYPNQKRLS METAGADDSA PYIGQRFLTH DAAYEFYSGF AKQCGFSIRR  60
HRTEGKDGVG KGLTRRYFVC HRAGNTPAKP FSDGAKPQRN RKSSRCGCQA YLRIGRDAGA  120
GAPEWRVTGF SNQHNHELLP LDQVRFLPAY RVISDSDRDR ILMFAKSGIS VQQMMRIMEL  180
EKFVEPGSLP FTEKDVRNLI LSFRRFDQEE ESVDLLRMCR NVKEKDPNFV YDFTKANDRL  240
ENIAWSYASS IQSYEIFGDA VIFDTNHRLT GLDMALGIWF GMNNYGMPCF FGCTLLREES  300
VHSFAWALQA FLNFVNRKAP LTILTDQNVY LKEAVEKELP NTKHALSILL IAARFPSWFS  360
AVLGKRYNDL KNEIYRLYSM ENTIDFDLGW SDMVNCYGLH GDRHIATLFA SRKHWALPYL  420
RGYFLAGLTA IPEVSNSINA FIQQFMRAQT CISHFVEQVA IVVDDKDQAV GQQIMQENPQ  480
TISLKTAAPM EAHAAAVLTP YAFSKLQDEL VAAAHYASFH LEGNAFLVRH RTKTEGRSSV  540
TWNQSEQLVS CSCQLFESSG ILCRHALLVL TTLNYLQIPD HYLPVRWRRT QSPPPNSLNG  600
IPDHGGASER VKALQSMVSA LVSEAAKSDE RIDLATQEIS DLLSRIRQQP VFRECFR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G092500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581280.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_010239957.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	I1IY68	0.0	I1IY68_BRADI; Uncharacterized protein
STRING	BRADI5G11330.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15171	15	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Brast09G092500.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]