PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G092900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 193aa    MW: 21004.3 Da    PI: 5.7181
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G092900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-182171155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GVr +k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Brast09G092900.1.p 21 SQYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 71
                        78*****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-192181IPR016177DNA-binding domain
PfamPF008471.9E-112171IPR001471AP2/ERF domain
SMARTSM003801.8E-342287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-292282IPR001471AP2/ERF domain
PROSITE profilePS5103222.6422281IPR001471AP2/ERF domain
PRINTSPR003676.5E-102334IPR001471AP2/ERF domain
CDDcd000182.92E-262381No hitNo description
PRINTSPR003676.5E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDESSGKAHQ SPSNASASSQ SQYRGVRKRK WGKWVSEIRQ PGTKTRIWLG SFESAEMAAV  60
AHDVAALRLR GGRGSAQLNF PGSADRLPRP ASSHPEDVRA AAAEAAELVR REPALVARRG  120
EHYEEAGRVP EDQLQQVGRK GSDEELDVDS PRLWAEMAEA MLLDPPAWAT AAGCEMDQAA  180
YCWSQGSLWD AY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-162281563ATERF1
3gcc_A9e-162281563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G092900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581277.14e-96ethylene-responsive transcription factor ERF027
TrEMBLA0A0Q3E8Z89e-95A0A0Q3E8Z8_BRADI; Uncharacterized protein
STRINGTRIUR3_32168-P12e-66(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-22ERF family protein