PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G095200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 418aa    MW: 45416 Da    PI: 7.5585
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G095200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.51.4e-1275156286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + aLi+a  e+  +l+rg+l+ p+W+ev++ +    +  +  +s +qCk++++ l+k+yk +++   +       +++++d+l+
  Brast09G095200.1.p  75 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADSVsareSYSKAAKSDIQCKNRIDTLKKKYKIERAKPVS-------SWQFYDRLD 156
                         *************************************74433344567999**************99887765.......589998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.3E-2273157No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDDDDLHGDV SPSPTPSPTS SSPLPVASAL PVADPVTVAS APPGGLMTLA LPIQKHGVYP  60
NHGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR HPQWQEVADS VSARESYSKA  120
AKSDIQCKNR IDTLKKKYKI ERAKPVSSWQ FYDRLDVLLA PTYNQKPAVH PNGRNPVPTA  180
LRAGFPKRSR TPLMPAAAPV KQRAPSPEPS ASSESSDGFP PEPALPVANG KRRRTDEGRG  240
DGSSGNDRAQ GLRELAQAIR RFGEAYERME TAKLEQTTEM ERRRLDFARE LESQRVQFFL  300
NTQRELSQAK KHNSPVAAAS PAGATIVGGS SRRMTSIPDP PSRRRMTSVP TVRTSSNHHG  360
RYHISESSRH QHHQHRPAPR PHYQYHENNF AASAAASDGE QSDDEEEDDD GDEEESQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G095200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239949.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG82e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLI1IY380.0I1IY38_BRADI; Uncharacterized protein
STRINGBRADI5G11070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-40sequence-specific DNA binding transcription factors