PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G102800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family EIL
Protein Properties Length: 452aa    MW: 49436.3 Da    PI: 5.7007
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G102800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3353.15.4e-108653402273
                         XXXXXXXXXXXXXXXXXXXXXX.....XXXXX.......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   2 elkkrmwkdqmllkrlkerkkq...lledkeaa......tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkp 83 
                         +lkkrmwkdqmll++l++ +     + +++ +a         k s++++ ++rrk+m raQDg+L++Ml++me+cna+GfvYgi++e g p
  Brast09G102800.1.p  65 DLKKRMWKDQMLLMKLEGSSGGhdrRAGAQRPAagshlvQARKDSETPESRYRRKAMLRAQDGVLRHMLRMMEACNARGFVYGIVDEAGVP 155
                         8***************9987651113444444488888433444568999***************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH-- CS
                EIN3  84 vegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWP 174
                         v+g+sdsLr+WWke+v f+r gp a++       +l+     + e+ss  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWP
  Brast09G102800.1.p 156 VSGSSDSLRGWWKEDVGFERSGPLALIGPG---TALG-----SPESSSFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWP 238
                         **************************9982...3333.....3456899****************************************** PP

                         -S--HHHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXX CS
                EIN3 175 tGkelwwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahs 264
                         tG+e wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp+++++r+l++qsk+lq++msa++  ++++v+ qee++ ++v+ + 
  Brast09G102800.1.p 239 TGQEVWWGLQGeTQAHQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQMRRLVWQSKRLQNRMSARDAETWSRVITQEEALDRQVQRSL 329
                         *************************************************************************************999885 PP

                         X..XXXXXXXX CS
                EIN3 265 s..slrkqspk 273
                         +   l k++ +
  Brast09G102800.1.p 330 QitPLGKEEDD 340
                         43444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.9E-11265319No hitNo description
Gene3DG3DSA:1.10.3180.107.8E-63194328IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.22E-55197321IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAGPNVSDDE KSAPALQQLP RPAMDRGKAK ADRHAAVVAA EEEPDQNEEL FSESESGSES  60
IEIADLKKRM WKDQMLLMKL EGSSGGHDRR AGAQRPAAGS HLVQARKDSE TPESRYRRKA  120
MLRAQDGVLR HMLRMMEACN ARGFVYGIVD EAGVPVSGSS DSLRGWWKED VGFERSGPLA  180
LIGPGTALGS PESSSFLHGL LDIQDSTLGS LLSALIQHCE PPQRSFPLDR GLPPPWWPTG  240
QEVWWGLQGE TQAHQGPPPY RKPHDLKKAW KISLLSAVIK HLSPRFDQMR RLVWQSKRLQ  300
NRMSARDAET WSRVITQEEA LDRQVQRSLQ ITPLGKEEDD DDKECAVGDG PGAAVRGLHV  360
DKRKRQAVGN ESAGGNFDST GGGGERLATL SGIEGVAEAD RNSIDELMKM YYSCLQGTDG  420
GEQDIKDVVA VGRVGGEQSN TPAQNAPLDA EK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-481983254130Protein ETHYLENE INSENSITIVE 3
4zds_B1e-481983254130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G102800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311314.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ54e-89EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9LX164e-89EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0Q3I9Y70.0A0A0Q3I9Y7_BRADI; Uncharacterized protein
STRINGBRADI5G12127.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.13e-90EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]