PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G114600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 728aa    MW: 77364.2 Da    PI: 6.7965
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G114600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30295352260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+k
  Brast09G114600.1.p 295 EDGYSWRKYGQKQVKHSEYPRSYYKCTHQSCQVKKKVERSH-EGHVTEIIYKGTHNHPK 352
                         8****************************************.***************85 PP
2WRKY102.81.9e-32524582159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+++d k v++tYeg+H he
  Brast09G114600.1.p 524 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCAVRKHVERASHDLKSVITTYEGKHSHE 582
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28285353IPR003657WRKY domain
SuperFamilySSF1182903.27E-25289353IPR003657WRKY domain
PROSITE profilePS5081122.86289353IPR003657WRKY domain
SMARTSM007741.9E-33294352IPR003657WRKY domain
PfamPF031061.7E-23295351IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-36509584IPR003657WRKY domain
SuperFamilySSF1182901.96E-28516584IPR003657WRKY domain
PROSITE profilePS5081136.988519584IPR003657WRKY domain
SMARTSM007742.2E-37524583IPR003657WRKY domain
PfamPF031061.0E-24525581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MDGGHTHIAM AMEQWKQHPN PGPECLMPSF LTDPFPPDPL VEDGTGNESA FEKHGLSVAV  60
GSPQDEGKPA QLTPHFGGRM SGSSSSLSER MQARAGFSVP KLSMPFATPA GDDSEQSGAQ  120
SPIFTVPPGL SPASLLESPV FLSNAMGQAS PTTGKLFMLG DANDNNPTRI EAPSIEGGTA  180
AFSFKSLDLK SSRYVAQEMK ESLPNNQHPS LPSRDVPVKT ETNIQATQGA NSLGHPNQVH  240
FNGQELMKSS YQRNRLAIDS IVGRDNGSPP DHGQPAADSE ASPATMAAAT ATPAEDGYSW  300
RKYGQKQVKH SEYPRSYYKC THQSCQVKKK VERSHEGHVT EIIYKGTHNH PKPAAQGRRL  360
PGVPQVHPFG DMDIAAADNN NGNAGGATAT QQPNAEARQL WHGGGSMGVQ VQDWRGGDGL  420
EATSSPGELC DSSASMQVHD GAAAKFESPE GVDVTSAVSD EVDGDDRVCA HGSMSQGAAD  480
AGEGDELESK RRKLESCAIE VSTASRAVRE PRVVIQTTSE VDILDDGYRW RKYGQKVVKG  540
NPNPRSYYKC THPGCAVRKH VERASHDLKS VITTYEGKHS HEVPAARNGG HAIPGSAAAA  600
QLAHARRPEP PSMAQDGLMM GRLGAPFGLP PRDPLGPMSN FPYSLGGAHA SAAGGSLPSL  660
PMPAAVEGLK LPMLSPCSLH PLFRHRQAME TAAGFRLPKG EVKEEPSNPS ASAYQQMMSR  720
LPLGHRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36279585278Probable WRKY transcription factor 4
2lex_A6e-36279585278Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G114600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751041.10.0probable WRKY transcription factor 20 isoform X1
TrEMBLA0A2K2CGY30.0A0A2K2CGY3_BRADI; Uncharacterized protein
STRINGBRADI5G13090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-104WRKY DNA-binding protein 2