PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G117500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 219aa    MW: 24127.6 Da    PI: 8.1916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G117500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.89.2e-1581441128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvkaeekew.yfFskrdkkyatgkrknratksgyWkat 86 
                         lp G+ F+P+  elv ++L +k+ g++ ++   + + vd++++ P  Lp    + k++ + w yfF+++   +        +++ g W   
  Brast09G117500.1.p   8 LPTGYVFRPKALELVEDFLVPKALGRDvIPG-FIAEGVDVFSASPDALPFcsnHRKGRGEVWgYFFAPQPAGE----G-PLVASGGCWLPY 92 
                         699***********************94444.457778***********533333335557899999986643....3.345678****** PP

                 NAM  87 gkdkevlskkgelvglkktLvfy..........kgrapkgektdWvmheyrl 128
                         g  k+ +  +ge+v  ++ ++++           g ++   +t+W+m eyrl
  Brast09G117500.1.p  93 GPVKAYHGGDGEAVAFRQRFAYHmvrlimwevcGGGREAWAQTRWLMTEYRL 144
                         *******99**************777777666535566668*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-213173IPR003441NAC domain
PROSITE profilePS5100520.2818173IPR003441NAC domain
PfamPF023651.6E-109144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAMAVRNLPT GYVFRPKALE LVEDFLVPKA LGRDVIPGFI AEGVDVFSAS PDALPFCSNH  60
RKGRGEVWGY FFAPQPAGEG PLVASGGCWL PYGPVKAYHG GDGEAVAFRQ RFAYHMVRLI  120
MWEVCGGGRE AWAQTRWLMT EYRLNKGAAA FRYAQTGDPK VNMDCVIRKV FTKPEVAPLL  180
PSPARSSDEE STGTNYAIAD EEACYPGEEQ ARKRARFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G117500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311977.11e-131NAC domain-containing protein 67
TrEMBLA0A0Q3P3371e-127A0A0Q3P337_BRADI; Uncharacterized protein
STRINGBRADI5G13300.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.16e-09NAC domain containing protein 95