PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G133100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 240aa    MW: 26180.3 Da    PI: 8.711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.61.3e-11121502128
                 NAM   2 ppGfrF.hPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.....kvkaeekew.yfFskrdkkyatgkrknratksg 81 
                         ppG  F +P+  +++++yL++k+ +      ++  +v + vd++++ P+ Lp      ++  + + w yfF+ r         + r +  g
  Brast09G133100.1.p  12 PPGHAFtKPRGRQIITQYLAPKALHGGrgafFPG-HVAEGVDVFSASPEALPFhpscnRTPRNGDVWgYFFAARPAG------NARPVPGG 95 
                         78999956**************887775664444.678999**********95476554444566889999998774......4688899* PP

                 NAM  82 yWkatgkdkevlsk..kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                          W   g dk   +    +++v  ++ ++f+      +g    ++ t W+m+eyrl
  Brast09G133100.1.p  96 CWVRYGPDKGYGHGgdPQAAVAFRRRFAFHvtwlrgDGGGVASVPTPWLMKEYRL 150
                         **********9997555566**********99887767788889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-194177IPR003441NAC domain
PfamPF023651.2E-912150IPR003441NAC domain
PROSITE profilePS5100518.67812177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MASTAVRTPQ PPPGHAFTKP RGRQIITQYL APKALHGGRG AFFPGHVAEG VDVFSASPEA  60
LPFHPSCNRT PRNGDVWGYF FAARPAGNAR PVPGGCWVRY GPDKGYGHGG DPQAAVAFRR  120
RFAFHVTWLR GDGGGVASVP TPWLMKEYRL NKGAPAFRAG PWAAANMDCV VCKVFRKPVV  180
HPPPFVSDDD DEVLPDSSYP SEDEEEADDY YSSDEDQERK RVGCSIEGRA TKRARFGRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G133100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227184.11e-119uncharacterized protein LOC104581393
TrEMBLA0A0Q3H5571e-147A0A0Q3H557_BRADI; Uncharacterized protein
STRINGBRADI5G14740.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-08NAC family protein