PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G149100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 200aa MW: 21242.1 Da PI: 10.3699

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G149100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.9	3.7e-34	49	161	4	89
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec..eaesssssas.nsssg.. 88 +k +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++t+eWLl+qa+p+i ++tg+++++a +c +++s+s + + Brast09G149100.1.p 49 AKAGGKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTVEWLLRQAEPSILAATGSGTTPAvFSCssAPSASVSLLGkR---Pre 136 677789********************************************************98888444443222222222211...022 PP TCP 89 ........................k 89 Brast09G149100.1.p 137 dqeppppssfwealqarpmawglsP 161 3444555555655544444444331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-29	52	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.932	53	107	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MASRDAAATF QLYRPMSTSM PTPTPQTMTL PFSAEGADAV VPSAPRKPAK AGGKDRHSKV 60 NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTVEWLLRQA EPSILAATGS GTTPAVFSCS 120 SAPSASVSLL GKRPREDQEP PPPSSFWEAL QARPMAWGLS PSQEAQAYAS VAQGHVHHHH 180 LNLLSALSGA ARPPEEESR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G149100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359408	1e-129	AK359408.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096D21.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580173.1	1e-99	transcription factor TCP21
TrEMBL	I1IZV3	3e-98	I1IZV3_BRADI; Uncharacterized protein
STRING	BRADI5G16270.1	4e-99	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	8e-35	TCP family protein

Link Out ? help Back to Top
Phytozome	Brast09G149100.1.p