PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G151000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 493aa    MW: 52086.4 Da    PI: 8.3396
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G151000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18223273256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Brast09G151000.1.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 273
                         59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-31223281IPR001471AP2/ERF domain
PROSITE profilePS5103222.787223280IPR001471AP2/ERF domain
SMARTSM003805.0E-38223286IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22223282IPR016177DNA-binding domain
CDDcd000182.86E-30224281No hitNo description
PfamPF008478.1E-12224273IPR001471AP2/ERF domain
PRINTSPR003673.6E-10224235IPR001471AP2/ERF domain
PRINTSPR003673.6E-10246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDASSESGGG GGRGTGSGRR SGKGLTPIQA RRQQQHLAPV LEDASAALLR PLKKIGRSPD  60
RLHRTTSTLS TSSSSSAPAS PRSSSVSNAA ASPPSARHIF PYAYEPIASA AASTTTTQGG  120
SPRLDLQPWP QSSTSVSQPA SPVQRQQPLR HQQMISFGAS SPPYCATQPF LVPAEGAHQQ  180
QLLRYWSEAL NLSPRGGGPT MPPSLYQQLL LQAPPPPPPP QKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDSAEDAA MAYDREAFKL RGENARLNFP DRFLAKGRAG GSGRTSASSA  300
AAPSTAAASC SSSSSSPPQA SDEAAPNTQH QQQDPRQHAE GTTTSFENQL PQHPLIPTTT  360
TIVQETTGSS RSRDAATAPY SAEMFHAPAA ASSSGGAMWA TADEAWFNAW GPGSSFWDYD  420
MEDEGARGLF LHPRFVSGDD AGMAHSGAQE IAPAGTSGTP CPCDDDVPVI SSSAPPPPPE  480
TAQAPNLMWK QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19222282465ATERF1
3gcc_A2e-19222282465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G151000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581450.10.0ethylene-responsive transcription factor ERF053
TrEMBLI1IZX40.0I1IZX4_BRADI; Uncharacterized protein
STRINGBRADI5G16450.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.19e-34ERF family protein