PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G153900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 299aa    MW: 31755.4 Da    PI: 6.2523
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G153900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ l+d+v+  G+g+W+  ++  g++R++k+c++rw +yl
  Brast09G153900.1.p 14 KGPWTPEEDKVLLDYVQASGPGNWRMLPKLAGLNRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding51.91.7e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w++ 
  Brast09G153900.1.p  67 RGPFTPEEHKSILQLHAVVGNK-WSMIAAQLP-GRTDNEIKNYWNTN 111
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24563IPR009057Homeodomain-like
PROSITE profilePS5129417.977961IPR017930Myb domain
SuperFamilySSF466895.75E-3211108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002498.0E-151461IPR001005SANT/Myb domain
CDDcd001671.52E-101661No hitNo description
PROSITE profilePS5129425.84862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2664116IPR009057Homeodomain-like
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1467112IPR001005SANT/Myb domain
CDDcd001673.31E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRTPCCDSK GLKKGPWTPE EDKVLLDYVQ ASGPGNWRML PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEHKSILQ LHAVVGNKWS MIAAQLPGRT DNEIKNYWNT NLKKQLRQAA  120
LGAGEHPGAL AAITTTSDTP APGAAAISSP AARHAAQWET ARLEAEARLS LVSTSGAAAT  180
ASSSSSTVAA DAEHPPPDIF LRLWNSEVGD TFRSSSSAAA AAREEQQEEG ALLPSSSTQP  240
KPAEDSSATS NVTTAAGAGL TAEEYQMFLD MAAEDLGLFH GGGFSQLYQS PSLFAEFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G153900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086211e-116AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581451.11e-162transcription factor MYB41
SwissprotQ9M2D94e-83MYB17_ARATH; Transcription factor MYB17
TrEMBLI1J0131e-161I1J013_BRADI; Uncharacterized protein
STRINGBRADI5G16707.11e-161(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-73myb domain protein 17