PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G157900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 438aa    MW: 46673.2 Da    PI: 6.9399
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G157900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19355389135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Brast09G157900.1.p 355 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 389
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-14348409No hitNo description
PROSITE profilePS5011412.36349385IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-18349403IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15353387IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.15E-15354411No hitNo description
PfamPF003203.1E-17355389IPR000679Zinc finger, GATA-type
PROSITE patternPS003440355380IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLHQTLIPSS SPSCCPSVSA SLSSPLLFPS NARDTAAATT ASSPLLCSPA MPSYAHHRSS  60
LDERMEALKG SSRQEETAEE VAAAAEAPAA WGFGDRDGFS VEDLLDLEEF CEADKDGADE  120
TEAPPAADNQ EKSNDDSLES VVSYDVVVPH APSVPEIVDL PAHDAEELEW VSRIMDDSLS  180
ELPPPPPPPP ASMMASLAGR PPQHRLMQQQ RRPHDGAYRA LPSSASDPLR TPTICALSTE  240
ALVPVKAKRS KRSRASGWSL SGAAPDSTSS SSTTTTSSCS SSASFSPYFL MDSVHLGAMD  300
LTEDYNLGAP PPKKSKHGKH SKHKPKKRGR KPKHLPPHPS SAAVAAAGFQ SDRRCSHCGV  360
QKTPQWRAGP EGAKTLCNAC GVRYKSGRLL PEYRPACSPT FESTIHSNSH RKVLEMRRKK  420
EDGPLTVSAT APVVASF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G157900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581466.10.0GATA transcription factor 5
TrEMBLI1J0550.0I1J055_BRADI; Uncharacterized protein
STRINGBRADI5G17057.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-40GATA transcription factor 5