PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G160100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 198aa    MW: 21707 Da    PI: 11.6279
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G160100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.91.7e-102384165
            trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                        +Wt++e+laL +a++ +  +++r+ l+ ++W++v++       ++++ qC++k+e+l++r +  +
  Brast09G160100.1.p 23 CWTNDETLALARAYTARRLAVGRAHLASADWAAVAAEA---TPSKTARQCRHKIEKLRRRLRSKR 84
                        8*********************************9865...5578999***********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-82285No hitNo description
Gene3DG3DSA:1.10.10.604.5E-42481IPR009057Homeodomain-like
PROSITE profilePS500906.4232477IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTSHPSPPAN AMMASARRVP PPCWTNDETL ALARAYTARR LAVGRAHLAS ADWAAVAAEA  60
TPSKTARQCR HKIEKLRRRL RSKRRRPFPL LDGIDLLDDP SSSPSHSRSQ SPSPPPPASP  120
PPPSASPPKK RKRPDAAESD VVKALKAIGE GFVRAELRRM EAARETQRMR MEMALRHLDA  180
QRQLVDGLVG RIVDALE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480KLRRRLR
27581LRRRLRS
3127133PKKRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G160100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0980631e-140FP098063.1 Phyllostachys edulis cDNA clone: bphylf053e20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014750970.12e-74uncharacterized protein LOC100840495
TrEMBLA0A0Q3P4Y85e-73A0A0Q3P4Y8_BRADI; Uncharacterized protein
STRINGGRMZM2G320827_P013e-64(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024