PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G161300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 237aa    MW: 25807.2 Da    PI: 8.561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G161300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32157215159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+
  Brast09G161300.1.p 157 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 215
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33142215IPR003657WRKY domain
SuperFamilySSF1182902.09E-28149215IPR003657WRKY domain
PROSITE profilePS5081128.92152214IPR003657WRKY domain
SMARTSM007741.4E-37157216IPR003657WRKY domain
PfamPF031064.1E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGTSRLEAC LPSLYTLDPY TAPPPLPPFL APLPNQHKLL QQMPLVVQEQ SGNHGVMFSS  60
DHGGGGLYPL LPGIPFCHSA AASDKPATGF APLAAAEVGT SAAIAGNEVA STTTATTATS  120
HGASSWWKGT EKGKMKVRRK MREPRFCFQT RSDVDVLDDG YKWRKYGQKV VKNSLHPRSY  180
YRCTHSNCRV KKRVERLSED CRMVITTYEG RHTHTPCSDD DAAGGEHTGA CAFTYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24148214874Probable WRKY transcription factor 4
2lex_A2e-24148214874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G161300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751531.11e-141probable WRKY transcription factor 12
TrEMBLA0A0Q3KUK21e-140A0A0Q3KUK2_BRADI; Uncharacterized protein
STRINGTraes_2AL_B1270662B.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.18e-59WRKY family protein