PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G161300.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 236aa MW: 25621 Da PI: 8.561

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G161300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.8	3.8e-32	156	214	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+H+h+ Brast09G161300.2.p 156 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHTHT 214 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-33	141	214	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-28	148	214	IPR003657	WRKY domain
PROSITE profile	PS50811	28.92	151	213	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	156	215	IPR003657	WRKY domain
Pfam	PF03106	4.1E-25	157	213	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MEGTSRLEAC LPSLYTLDPY TAPPPLPPFL APLPNQHKLL QQMPLVVQEQ SGNHGVMFSS 60 DHGGGGLYPL LPGIPFCHSA AASDKPATGF APLAAAEVGT SAAIAGNEVA STTTATTATS 120 HGASSWKGTE KGKMKVRRKM REPRFCFQTR SDVDVLDDGY KWRKYGQKVV KNSLHPRSYY 180 RCTHSNCRVK KRVERLSEDC RMVITTYEGR HTHTPCSDDD AAGGEHTGAC AFTYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	147	213	8	74	Probable WRKY transcription factor 4
2lex_A	2e-24	147	213	8	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G161300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014751531.1	1e-138	probable WRKY transcription factor 12
Swissprot	Q93WY4	2e-57	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	A0A0Q3KUK2	1e-137	A0A0Q3KUK2_BRADI; Uncharacterized protein
STRING	Traes_2AL_B1270662B.1	1e-132	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	6e-58	WRKY family protein

Link Out ? help Back to Top
Phytozome	Brast09G161300.2.p

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]