PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G163400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 227aa    MW: 25487.8 Da    PI: 9.1958
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G163400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1975129256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  Brast09G163400.1.p  75 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 129
                         788899***********************************************98 PP
2HD-ZIP_I/II126.21.5e-4075164191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Brast09G163400.1.p  75 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 164
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.21E-1864132IPR009057Homeodomain-like
PROSITE profilePS5007117.28171131IPR001356Homeobox domain
SMARTSM003891.7E-1673135IPR001356Homeobox domain
PfamPF000468.0E-1775129IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1875129IPR009057Homeodomain-like
CDDcd000862.84E-1575132No hitNo description
PRINTSPR000314.0E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6111127IPR000047Helix-turn-helix motif
PfamPF021832.0E-11131165IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.3E-25131175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMERAEDLGL SLSLSSSSLA PRTHHVAMLF HAPERRFLEM PLLPAKRSSE AAGDDSSLRG  60
GSDEEDGGCG VDGSRKKLRL SKDQSAVLED SFREHPTLNP RQKAALAQQL GLRSRQVEVW  120
FQNRRARTKL KQTEVDCEFL KRCCETLTEE NRRLQKEVQE LRALKLVSPR HYMHMSPPTT  180
LTMCPSCERV SNKNNNNNNN NNSAAADRRG DVAICHRPIA VRPQQS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379SRKKLRL
2123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G163400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581495.11e-138homeobox-leucine zipper protein HOX17
SwissprotQ01I231e-108HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLI1J0B51e-137I1J0B5_BRADI; Uncharacterized protein
STRINGBRADI5G17570.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-73homeobox protein 2