PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G163900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 343aa    MW: 37210 Da    PI: 6.7758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G163900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.6e-123075146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W +eEde l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
  Brast09G163900.1.p 30 KGPWMAEEDEALLEHVRAHGPCDWSSIRSKGILPRTGKSCRLRWVN 75
                        79*************************8876678**********87 PP
2Myb_DNA-binding43.19.6e-1486126345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
  Brast09G163900.1.p  86 KFSAEEERVVIELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 126
                         79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2992577IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-192778IPR009057Homeodomain-like
SuperFamilySSF466891.52E-2628125IPR009057Homeodomain-like
SMARTSM007174.7E-102979IPR001005SANT/Myb domain
CDDcd001675.12E-113277No hitNo description
PfamPF139218.3E-113383No hitNo description
PROSITE profilePS5129420.19878133IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-1879131IPR009057Homeodomain-like
SMARTSM007173.1E-1283131IPR001005SANT/Myb domain
CDDcd001679.94E-1186125No hitNo description
PfamPF002495.5E-1286126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MARAPGGGGG GARRRSGRRD AAAGGEAVRK GPWMAEEDEA LLEHVRAHGP CDWSSIRSKG  60
ILPRTGKSCR LRWVNKLRPN LKSGCKFSAE EERVVIELQA QFGNKWARIA TYLPGRTDND  120
VKNFWSTRQK RLARLLRAPL RARSSKSSNA KAPASSLEPS VTENLQRHQG SCHDQVPFLG  180
SSSGGQCWAA APLMEYQGAA GIPHDQESSA FFSFEGPLPL QAVPQLPLSD GEASSSNVAL  240
FAPELQFDQP PYHLLDFPGL SERCNIGPGF VGASAMDDLA YQELLPIVQP APTPMMLPFF  300
GMECGRDAVK IETRDDFFDD LPPDMFDSLD QPPPPLSPSA TN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-263013127126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G163900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630004e-58AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316134e-58AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149604e-58AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126124e-58CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552184e-58CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240210.30.0probable transcription factor MYB58
SwissprotQ0JB891e-119MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2K2CHV30.0A0A2K2CHV3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI5G17600.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-58MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]