PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G164200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 195aa    MW: 21320.7 Da    PI: 5.3013
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G164200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-174391355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y GVr +  +grWv eIr+p++   + r++lg+fg+ae+Aa+a++ a+++++g
  Brast09G164200.1.p 43 YYGVRMRN-WGRWVTEIREPRK---KSRIWLGTFGSAEKAARAHDVAALAIKG 91
                        77***998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.50E-2941101No hitNo description
SuperFamilySSF541711.9E-2041100IPR016177DNA-binding domain
SMARTSM003801.8E-3042105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2942100IPR001471AP2/ERF domain
PROSITE profilePS5103221.6414299IPR001471AP2/ERF domain
PfamPF008474.8E-124391IPR001471AP2/ERF domain
PRINTSPR003677.0E-94354IPR001471AP2/ERF domain
PRINTSPR003677.0E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MKDTHKPRSQ TSPATTFSSS STLSSSSVGA NKRPRKEGRQ STYYGVRMRN WGRWVTEIRE  60
PRKKSRIWLG TFGSAEKAAR AHDVAALAIK GPAAHLNFPD LMHLLPRAAS AEPKDVQEAA  120
ALAAAMDFPG DTDGKNPENT SDTQVVLPQP PPPHDEAGLE FDSSSDLPSD SPWVADDNMY  180
IDDVFNLEDL MLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1540991272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G164200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581499.11e-110ethylene-responsive transcription factor ERF039
SwissprotQ9M0802e-38ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLI1J0C11e-109I1J0C1_BRADI; Uncharacterized protein
STRINGBRADI5G17630.11e-109(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]