PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G164300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 208aa    MW: 22022.5 Da    PI: 6.2414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G164300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.6e-174490252
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                         y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++
  Brast09G164300.1.p 44 TYHGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVATLA 90
                        69****998.**********843...6*******************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-2844110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2944104IPR001471AP2/ERF domain
PROSITE profilePS5103221.86544104IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1844104IPR016177DNA-binding domain
PfamPF008475.0E-114491IPR001471AP2/ERF domain
PRINTSPR003676.0E-104556IPR001471AP2/ERF domain
CDDcd000181.23E-2345104No hitNo description
PRINTSPR003676.0E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDDTHEPRSP ASPAATSASS SSSSSSPVVA ANKRPRRDDG RHPTYHGVRM RSWGKWVSEI  60
REPRKKSRIW LGTFATAEMA ARAHDVATLA VKGRAAAQAH LNFPGLAHLL PRPASAAPKD  120
VQAAAVLAAA PDFPCGANAK SPGSSPPAPS RDDEADPDDA LFDLPDLLLD LRYESSSALA  180
CASSWVVDDD MSAAGAFRLE EPLPWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14421041272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G164300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9653069e-95EU965306.1 Zea mays clone 285154 dehydration-responsive element-binding protein 1C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164576.13e-74ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0E0KTK32e-74A0A0E0KTK3_ORYPU; Uncharacterized protein
STRINGOPUNC04G18530.13e-75(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-34ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]