PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast09G172500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 342aa MW: 38630.1 Da PI: 8.9014

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast09G172500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.8	3.8e-27	200	249	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+k+L+v++++LKr+CRqyGI+RWPhRkiksl Brast09G172500.1.p 200 ASITLVDIAQYFHLPIREASKTLKVGVSILKRKCRQYGIPRWPHRKIKSL 249 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.759	184	269	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-22	201	249	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDAAVSTLSA LAVFVNTADH GAVRSVHGYK VVAKGGGCGW EKWVEREFAF SPSSCRELPA 60 PIAAPRLLSA DWLGRPVYRE GQIVGAWRCI LAFDSVAVVA PPRTPPPMLS PSENPRLMSV 120 PSLYEDLNKV FQFQNPEKVP ELIQCDPDEQ LTRLDERDRT SDEIGESDSD SDDDPQTGEG 180 NAGLPAPVQK QQRANHKHIA SITLVDIAQY FHLPIREASK TLKVGVSILK RKCRQYGIPR 240 WPHRKIKSLD SLIHDLEYVL DDTERDGVQR EKAKHKKKER EMEKEKEKQD AIRALAKRKK 300 MLESEKETIT LKPALDLMAE TKQFREDVFK RRYRAKNIAS R*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDAAVSTLSA LAVFVNTADH GAVRSVHGYK VVAKGGGCGW EKWVEREFAF SPSSCRELPA  60
PIAAPRLLSA DWLGRPVYRE GQIVGAWRCI LAFDSVAVVA PPRTPPPMLS PSENPRLMSV  120
PSLYEDLNKV FQFQNPEKVP ELIQCDPDEQ LTRLDERDRT SDEIGESDSD SDDDPQTGEG  180
NAGLPAPVQK QQRANHKHIA SITLVDIAQY FHLPIREASK TLKVGVSILK RKCRQYGIPR  240
WPHRKIKSLD SLIHDLEYVL DDTERDGVQR EKAKHKKKER EMEKEKEKQD AIRALAKRKK  300
MLESEKETIT LKPALDLMAE TKQFREDVFK RRYRAKNIAS R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast09G172500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003581531.1	0.0	protein RKD5
TrEMBL	A0A0Q3IDA0	0.0	A0A0Q3IDA0_BRADI; Uncharacterized protein
STRING	BRADI5G18430.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-48	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Brast09G172500.1.p