PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G175500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 790aa    MW: 84924.8 Da    PI: 5.3645
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G175500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-18110165156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rr+  ++++eq++eL++lF k+++p++ +r+eL+++l L+ +qVk+WFqNrR+++k
  Brast09G175500.1.p 110 RRPHARHSPEQIRELQALFDKCPHPDKMQRAELSRRLFLEPSQVKFWFQNRRTQRK 165
                         6788899**********************************************998 PP
2START142.83.4e-4532852926205
                         EXCCTTEEEEEEESSS......SCEEEEEEEECCS.CHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTT CS
               START  26 esengdevlqkfeeskv.....dsgealrasgvvd.mvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqa 100
                         e +n++e+l +f++  +     +++ea+r+sg+v+ ++++ lve l+d + +W++ +     k +t++ i++g      gal l++aelq+
  Brast09G175500.1.p 328 ETLNYEEYLNTFSPCIGvkpagFQSEASRESGIVIsDDSVALVEALMDER-RWSNIFScmvaKSSTIAEITTGvagsrdGALLLIQAELQV 417
                         779*********999889**************998345679*********.99999999999***************************** PP

                         XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCE.EEEEEEE-EE--SSXXHHHHHHH CS
               START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksngh.skvtwvehvdlkgrlphwllrsl 184
                         lsplvp R+++f+R+++qlg+g+w++vdvS+d     +      +   + +++lpSg+l++++  ++ +kv wveh++++++++h l+r+l
  Brast09G175500.1.p 418 LSPLVPiRKVTFLRFCKQLGEGTWAVVDVSIDGLVVDQGlaaasTTANMNCRRLPSGCLVQQDTRNGfCKVKWVEHTEYDESSVHPLYRPL 508
                         ******************************985433332333447778999*********98877777*********************** PP

                         HHHHHHHHHHHHHHHTXXXXX CS
               START 185 vksglaegaktwvatlqrqce 205
                         ++sgla ga +w+atlqrq +
  Brast09G175500.1.p 509 LRSGLALGAGRWLATLQRQSK 529
                         ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-2099166IPR009057Homeodomain-like
SuperFamilySSF466893.47E-1899165IPR009057Homeodomain-like
PROSITE profilePS5007117.022107167IPR001356Homeobox domain
SMARTSM003896.2E-16109171IPR001356Homeobox domain
PfamPF000463.0E-16110165IPR001356Homeobox domain
CDDcd000861.01E-16110165No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
SMARTSM002343.0E-27305530IPR002913START domain
PROSITE profilePS5084834.086309533IPR002913START domain
SuperFamilySSF559619.34E-20312529No hitNo description
CDDcd088751.03E-93313528No hitNo description
PfamPF018523.0E-38328529IPR002913START domain
SuperFamilySSF559611.13E-17552782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MPREKAMSFL GFFFDDDAPG AWADSGMELP SPGVFTLTPA LSVATADAAG HGRDAGRVVP  60
VGCGGGGTVR SASEADSERR SGTIDRLDVV SGGGFGRDED AALGMPRKRR RPHARHSPEQ  120
IRELQALFDK CPHPDKMQRA ELSRRLFLEP SQVKFWFQNR RTQRKAMLVR DENVQLRQEN  180
DKLRAENLSI LEAMRHPMCG DCGRPVVLGV LSLEEQHLRA QNARLTEELS RVCAAASEFL  240
GKSISLPSPL QTHQQEPMPG SPVEPAVGGV GSVPSTAVAS STITQFTGTA STSIGPAIMT  300
MGAAPLDIAG IDKSVLLELA KSAMDELETL NYEEYLNTFS PCIGVKPAGF QSEASRESGI  360
VISDDSVALV EALMDERRWS NIFSCMVAKS STIAEITTGV AGSRDGALLL IQAELQVLSP  420
LVPIRKVTFL RFCKQLGEGT WAVVDVSIDG LVVDQGLAAA STTANMNCRR LPSGCLVQQD  480
TRNGFCKVKW VEHTEYDESS VHPLYRPLLR SGLALGAGRW LATLQRQSKC WATLRSCVAA  540
REQYSSDVLA AGTQSLLKLA QRMMESFFSG VSASSALEWS KLDGFTDNIG NDVCVIERKS  600
VDEPGVPPGV VLCAATSVWM LVTPERLFQF LCDEGTRAEW DILSTAGPMQ EVTNIAKGQQ  660
DGNTVSLLRT NTTNTQQNGI LILQETCTDA SGSMVVYAPV DIPAMHLVMS GGDSASVPLL  720
PSGFVILPDG PTIPGDGHKT CGSLLTFAFQ ILVKNSEPTA KLTVESIQTV NNLISCTINR  780
IKTALHCDV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111PRKRRRP
2106110RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G175500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581542.20.0homeobox-leucine zipper protein ROC4
SwissprotQ7Y0V90.0ROC4_ORYSJ; Homeobox-leucine zipper protein ROC4
TrEMBLA0A0Q3ECH50.0A0A0Q3ECH5_BRADI; Uncharacterized protein
STRINGBRADI5G18717.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wei J, et al.
    GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.
    Plant Sci., 2016. 252: p. 133-143
    [PMID:27717449]
  3. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]