PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G178600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 247aa    MW: 25957.6 Da    PI: 11.0244
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G178600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.7e-25145189145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         ++epgrCrRtDGKkWRCsr v++g k+CErH+hrgr rsrk++e+
  Brast09G178600.1.p 145 QPEPGRCRRTDGKKWRCSRGVVPGLKYCERHVHRGRGRSRKPVEA 189
                         59****************************************985 PP
2QLQ47.65e-1775110237
                 QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         a+T +Q q+L+ Q+l+y+y+aa++PvP +L+++i+k
  Brast09G178600.1.p  75 ALTFMQRQELECQVLIYRYFAASAPVPVHLVLPIWK 110
                         79********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.6E-474110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-1075109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.54675110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.366145189IPR014977WRC domain
PfamPF088792.3E-20146188IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTERKLVCSP PSKLPRLSDA RVDDGAGEVT MATPSPLVLG LGLGVGGSPS ESSGGDKEAS  60
ASSSRDTRPT PKSAALTFMQ RQELECQVLI YRYFAASAPV PVHLVLPIWK SVASSSSSSG  120
VQRFPSLTGL GRLCFDHRSS DYSVQPEPGR CRRTDGKKWR CSRGVVPGLK YCERHVHRGR  180
GRSRKPVEAA ATNAIPIRAV HAAAGAQAAN ARALALQPPL PPQRVGFSSA AGAGVLLVHG  240
TARSTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G178600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227228.11e-113growth-regulating factor 12
SwissprotQ6AWX75e-76GRF12_ORYSJ; Growth-regulating factor 12
TrEMBLA0A0Q3ECM31e-112A0A0Q3ECM3_BRADI; Uncharacterized protein
STRINGTraes_2BL_DE9A7327E.11e-93(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.14e-32growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]