PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G183400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 449aa    MW: 49816.6 Da    PI: 6.5127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G183400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-1659103147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT++E++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  Brast09G183400.1.p  59 REKWTEDEHKLFLEAMHLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103
                         789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1554106IPR009057Homeodomain-like
PROSITE profilePS5129420.27154108IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-956111IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-1457106IPR006447Myb domain, plants
SMARTSM007171.2E-1258106IPR001005SANT/Myb domain
PfamPF002492.4E-1459102IPR001005SANT/Myb domain
CDDcd001676.79E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MARFEQTKAI DDQRPGAGQA GHQNLTEDLR NPLNSSDIDM LAEARVPKAR KPYMITKQRE  60
KWTEDEHKLF LEAMHLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNSNSSG  120
AAAPAIQIPP PRPKRKSVHP YPCNLRSAPG KHAHVLPRLE KPQLQMQQPL WEQVNGSPTS  180
VVTASQIGSE NFDSDTSTID IEERCPTSSI ATDEFAVQVP PTDAEEVKGS STPKEVVCDK  240
SEASVLKLFG KRVVVNDSHQ QPNLCNMQTV TEMELDASAE TTTSGTGKFS SHGASEENTW  300
NPWLINMQHF MYYLPQGAVF FSYNDGSVPY PLMSDPKPVT SDQQHQRQPS EADYKLMRRE  360
ASLVESNTTS SSVPETTTQY SDYAESCTKA NGGDDKIVPV AGLRKYVSPS SIHQRGFMPY  420
KRCAAESKVL QPQDPSEEAD GEMTRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G183400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580392.10.0protein REVEILLE 7-like
TrEMBLA0A0Q3IDM30.0A0A0Q3IDM3_BRADI; Uncharacterized protein
STRINGBRADI5G19380.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-32MYB_related family protein