PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G188600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 185aa    MW: 19787.2 Da    PI: 7.1958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G188600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000116385123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C  C + F++   L  H+++H
  Brast09G188600.1.p 63 YTCAFCRREFRSAQALGGHMNVH 85
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.61E-66089No hitNo description
PROSITE profilePS5015711.0116390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAPASSSETK HITLHNFLKQ QHLLQQQRLK PAAVLWSWPV PTRAAPAHDE DADGGASWPP  60
RSYTCAFCRR EFRSAQALGG HMNVHRRDRA KMRGHYAAAA ALAPPSSPSP AEDLQPAAAE  120
YALLYPVLNS SNGARAVFIP AAAGGGGNVL LSAAPMELAA RRCDLSDDDE NDSSIDLELR  180
LGWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-135885229superman protein
2l1o_A1e-135885229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G188600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227240.17e-96probable transcriptional regulator RABBIT EARS
TrEMBLI1J1562e-94I1J156_BRADI; Uncharacterized protein
STRINGBRADI5G19930.13e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.15e-22C2H2 family protein