PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G191800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 502aa    MW: 52156.2 Da    PI: 6.1529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G191800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.31e-30244302259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Brast09G191800.1.p 244 SDLWAWRKYGQKPIKGSPHPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 302
                         699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.856238304IPR003657WRKY domain
SuperFamilySSF1182903.4E-26241304IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.5E-31241304IPR003657WRKY domain
SMARTSM007748.7E-38243303IPR003657WRKY domain
PfamPF031068.1E-26245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGGGDL TDIVRAGGAM PPGNSGAGAG DDLPSTGAAD EWHHQLQQPM  60
LFPASPDVVF GAGADPFAGL GGDPFGSDYS SSSCGADFGL DVGAMAPKVG GFDAAGVSGG  120
GQTMLDMGCG GGRKPLLPRG MQGMQMAPGM GGMGAPRQLM AAAPSLSPIA IRPYPAMAAG  180
DMVKLGITAG QAAGCAIDAA VAGMQMSSPR TAGIKRRKNQ ARKVVCIPAP TTAGSRPTGE  240
VVPSDLWAWR KYGQKPIKGS PHPRGYYRCS SSKGCSARKQ VERSRTDPNM LVITYTSEHN  300
HPWPTQRNAL AGSTRSHHGK NGGSGSSGAK SSQNEKQSQA NNVKEERKDH AAAPTTTTTS  360
TITTTTSTAS PMIVKLEETL LAAGSSEALL ERDHERAMDT AAGVLVDHSD LMDHVFSESY  420
RPMIPESGHH EDFFADLAEL ESDPMSLIFS KEYMEARPSG TTGDHGQEKA AVATKDLDPF  480
DMLDWSTAST AGSTFEQGKG G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-24218305280Disease resistance protein RRS1
5w3x_D1e-24218305280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G191800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109121e-116AK110912.1 Oryza sativa Japonica Group cDNA clone:002-173-C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311256.10.0probable WRKY transcription factor 4
TrEMBLA0A0Q3KW100.0A0A0Q3KW10_BRADI; Uncharacterized protein
STRINGBRADI5G20290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-64WRKY DNA-binding protein 35