PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G195300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 390aa    MW: 42717.6 Da    PI: 8.1928
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G195300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.52.7e-24123167145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Brast09G195300.1.p 123 DPEPGRCRRTDGKKWRCSKEAAQDSKYCERHMHRGRNRSRKPVET 167
                         79****************************************997 PP
2QLQ591.4e-206095237
                 QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll++i++
  Brast09G195300.1.p 60 TFTAAQYEELEQQALIYKYLVAGVPVPPDLLLPIRR 95
                        6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-115995IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.2916095IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-146194IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.064123167IPR014977WRC domain
PfamPF088791.0E-20124166IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAMPFASLSP AADHRPSASS IFPFCRSSPL YPPVGEEAPP PPPQQQQHTM SARWAPRPAT  60
FTAAQYEELE QQALIYKYLV AGVPVPPDLL LPIRRGFDSL ASRFYLHHTA LGYGSSYFGK  120
KLDPEPGRCR RTDGKKWRCS KEAAQDSKYC ERHMHRGRNR SRKPVETQLV APLSQSQQQQ  180
PPSAAAPASA TAFQNHSLYP AIANGGNGGA PGSFTLGSTQ LHMDNAAPYA TAGGGGNKDF  240
RYYTYGVRSL AMDEQSQFMT GAMDTSMDNY SWRLLPSQTS AFSLSSYPLI GTLSGLDQNT  300
TCALPKAERE PLSFFGGDFT TAVDDNVKQE NQTLRPFFDE WPKARDSWPE LPDDNNSSFP  360
ATKLSISIPM TTSDFSTTSS RSPNGIYSR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G195300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2509471e-163AK250947.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf96d10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580449.10.0growth-regulating factor 3
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLI1J1E50.0I1J1E5_BRADI; Uncharacterized protein
STRINGBRADI5G20607.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-44growth-regulating factor 5