PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G197900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 277aa    MW: 31936.7 Da    PI: 8.4949
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G197900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.11.4e-2422105286
            trihelix   2 WtkqevlaLiearremeerlrrg...klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W  qe+++Li+ar e+e++  ++   +++k+lWe+v++++r+rg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  Brast09G197900.1.p  22 WGAQETRELIAARGELEREAAAAagrSSAKTLWEAVAARLRARGYRRTADQCKCKWKNLVNRYKGKETSNPGN----GRQCPFFEELH 105
                         ******************99985233799*****************************************984....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.0E-41883IPR001005SANT/Myb domain
PROSITE profilePS500907.4682181IPR017877Myb-like domain
PfamPF138379.4E-2321106No hitNo description
Gene3DG3DSA:1.10.10.609.3E-52182IPR009057Homeodomain-like
CDDcd122033.51E-162288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MMEAGGGGGG GGGFRDERVP PWGAQETREL IAARGELERE AAAAAGRSSA KTLWEAVAAR  60
LRARGYRRTA DQCKCKWKNL VNRYKGKETS NPGNGRQCPF FEELHAVFTE RARNMQRELL  120
QSESGASVKM KLKRTSGDQS SGESDDEEDE VEASEDEKPM RSRKRKAGDK GQQSQGIVEN  180
SRMGRSSIRD LLHDFLVQQQ HMDIQWHEVM ERRAQERLIF EQEWRRSMQK LEHERLMLEH  240
SWMEREEQRR MREEARAQKR DSLLTTLLNK FLQEDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G197900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163375.11e-145trihelix transcription factor GT-3a-like
TrEMBLA0A287J7681e-145A0A287J768_HORVV; Uncharacterized protein
STRINGBRADI5G20847.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-22Trihelix family protein