PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G210500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 195aa    MW: 22010 Da    PI: 9.45
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G210500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-172570555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Brast09G210500.1.p 25 HNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 70
                        99************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-191877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4442069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-212496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-152570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-172574No hitNo description
SMARTSM003531.7E-182675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEDGRAARRM SSAPTTRRSR SADFHNFSER RRRDRINEKL KALQELLPNC TKTDKVSMLD  60
EAIDYLKSLQ LQLQMLVMGK GMAPVVPPEL QQYMHYITAD PAQMQMPPLR PTSEPPRPFQ  120
ITLAGGGGGH PERQSNVESD FLSQMQNLNP SEPPHNFLRP PKLQLYTPEQ RGSGLGSSSG  180
WNIPERNSSY NFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G210500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2504581e-101AK250458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf83b20, mRNA sequence.
GenBankAK2505721e-101AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580559.11e-136transcription factor PIF1 isoform X1
TrEMBLI1J1W31e-135I1J1W3_BRADI; Uncharacterized protein
STRINGBRADI5G21950.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.16e-26phytochrome interacting factor 3-like 5