PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G229700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 104aa    MW: 11084.4 Da    PI: 9.4385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G229700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.0002829711555
                        HHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                        ++ + +++L+ llP  ++++++ +    + ++++++ YI+sLq
  Brast09G229700.1.p 29 QVSELLSKLQALLPDsQPRNGAHRgGAASRVVQETCSYIRSLQ 71
                        577889*********7666666666888899***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-52886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-63174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSSSSRRSRS RRAGSSLPSS SRRSISEEQV SELLSKLQAL LPDSQPRNGA HRGGAASRVV  60
QETCSYIRSL QQEVDDLSET LAALLASDAV PSDQAALIRT LLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G229700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580657.11e-43transcription factor ILI1
SwissprotA2XY471e-34ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7421e-34ILI1_ORYSJ; Transcription factor ILI1
TrEMBLI1J2G03e-42I1J2G0_BRADI; Uncharacterized protein
STRINGBRADI5G23580.15e-43(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.12e-19bHLH family protein