PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G230400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 319aa    MW: 34769.3 Da    PI: 6.6943
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G230400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.43.6e-17242276135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+C++t+Tp+WR+gp g +tLCn CGl+y+  ++
  Brast09G230400.1.p 242 CSHCQSTDTPQWREGPLGRRTLCNGCGLRYKMGRE 276
                         *******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.38E-13236284No hitNo description
PROSITE profilePS5011412.822236273IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-16236288IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-14240275IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.12E-13241299No hitNo description
PfamPF003207.2E-15242276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MRRPNNVFLS LYDVSLDDVG SLGCDQSSSS CRHDESALCC PDDSLDAVLD CVPAPEDELL  60
EALGIDCSLP PLDGGDDGNP NKSAEDDDMG VDVVRLPKFS TTPCDDDPER SLTLQEQLAS  120
PFHHWTIPTK RRGRSVRKSP WPCEFGQGSN GNGGSGGVRR QPTEPPHPVT VAANGNQFAQ  180
ASNGGGRSER HPVMVAAATG NQFAQGSNGG GGSGGRRQPV EPPRQRRRRR QENEDENEPR  240
ACSHCQSTDT PQWREGPLGR RTLCNGCGLR YKMGREKLVP EYCPSTSPFF RDGKHSNRHS  300
KVEKLRKKKE ERPSVEPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216226RQPVEPPRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G230400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227308.11e-122GATA transcription factor 12
TrEMBLA0A0Q3EAU11e-121A0A0Q3EAU1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-18GATA transcription factor 4