PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G234400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 227aa    MW: 24443.4 Da    PI: 10.4886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G234400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99e-1756105255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Brast09G234400.1.p  56 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 105
                         69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3055114IPR001471AP2/ERF domain
PROSITE profilePS5103222.58956113IPR001471AP2/ERF domain
SMARTSM003802.1E-3556119IPR001471AP2/ERF domain
PfamPF008472.4E-1056105IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2156115IPR016177DNA-binding domain
CDDcd000182.25E-2657114No hitNo description
PRINTSPR003675.7E-125768IPR001471AP2/ERF domain
PRINTSPR003675.7E-1295115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MQGEYRSSSE DSAASAAAAA AAAAMAPLAA AAALAAKEEQ LQQQQQQMQM QGQKRQYRGV  60
RMRKWGKWVA EIREPHKRTR IWLGSYATPV AAARAYDTAV FYLRGRSARL NFPDEISGLA  120
PLSSSSPATP SDDALSAASI RKKAIEVGSR VDALQTGIMM PVPAAAGAPQ PTPTAAHRER  180
PLKPRTHSQE SLEQQQQQKQ QRTAWNGRAK NPDLNQAPSP ESSDAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14561171476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G234400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538075e-81AK353807.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002O02.
GenBankAK3630755e-81AK363075.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012I21.
GenBankAK3644435e-81AK364443.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025D07.
GenBankKC8988025e-81KC898802.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988035e-81KC898803.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988045e-81KC898804.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988055e-81KC898805.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988065e-81KC898806.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988075e-81KC898807.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988085e-81KC898808.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988095e-81KC898809.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988105e-81KC898810.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988115e-81KC898811.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988125e-81KC898812.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988135e-81KC898813.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988145e-81KC898814.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988155e-81KC898815.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988165e-81KC898816.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988175e-81KC898817.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
GenBankKC8988185e-81KC898818.1 Hordeum vulgare hypothetical protein (MLOC_81350.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580694.11e-90ethylene-responsive transcription factor RAP2-1
TrEMBLI1J2M83e-89I1J2M8_BRADI; Uncharacterized protein
STRINGBRADI5G24110.15e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-39DREB and EAR motif protein 3