PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G241600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family SBP
Protein Properties Length: 426aa    MW: 46394.9 Da    PI: 7.8501
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G241600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40189267178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Brast09G241600.1.p 189 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 267
                         6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33184252IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.222187265IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-37188268IPR004333Transcription factor, SBP-box
PfamPF031107.7E-31190264IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMNLPASASS CDDFIGVYGA PPSNPISPNN PPPHQPASSL FPLMDHQEQQ RDHHHHHLGY  60
NLEPNSLALL PPSNAHHHHG ATIAAHSAHD ILQFYPTSAS SHHHYLAAAA AGNNPYSGHF  120
SAGGAFQSSY YGQQQQQGPE YSYFPALVSS AEENMASFAA TQLGLNLGYR TYFPPRGHGG  180
YAYGHHPPRC QAEGCKADLS GAKRYHRRHK VCEHHSKAPV VVTAGGLHQR FCQQCSRFHL  240
LDEFDDAKKS CRKRLADHNR RRRKSKPSDA DAADKKRSAQ ASKTASTKGK AAGSSSKSTG  300
TGDGMDIQVL GVADLSKDQD ETMGLGEVVK EMQVDPKGKA SMQQQQQGHH GLHQQQQSHH  360
GFHFPSSSAG SCFPHQSQAV SSSDNTSNIA QVQEPSLAFH QQQHHHQHSN ILQLGQAMFD  420
LDFDH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261902641184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259276RRRRKSKPSDADAADKKR
2260265RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G241600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240547.10.0squamosa promoter-binding-like protein 8
SwissprotQ01KM71e-170SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLI1J2U90.0I1J2U9_BRADI; Uncharacterized protein
STRINGBRADI5G24670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-38squamosa promoter binding protein-like 8