PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G242100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 142aa    MW: 15765.6 Da    PI: 7.879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G242100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-17653253
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                        +ykGVr+++ +g+Wv eIr+p+    ++r++lg+++tae Aa+ +++a++ l
  Brast09G242100.1.p  6 QYKGVRQRR-WGSWVTEIRHPVL---KTRIWLGSHDTAEAAARTYDEAARFL 53
                        6*****998.**********744...5**********************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.05E-25665No hitNo description
SuperFamilySSF541714.12E-16665IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-26665IPR001471AP2/ERF domain
PROSITE profilePS5103218.953663IPR001471AP2/ERF domain
SMARTSM003805.7E-25669IPR001471AP2/ERF domain
PRINTSPR003671.3E-8718IPR001471AP2/ERF domain
PfamPF008471.7E-10753IPR001471AP2/ERF domain
PRINTSPR003671.3E-82945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MPKTHQYKGV RQRRWGSWVT EIRHPVLKTR IWLGSHDTAE AAARTYDEAA RFLSMPVTHT  60
NFPSSYTTGN LTEKVRVKLE KYRVSPPPSS AAMASSSSLI GAGGDTVNDY DEEFVEEMLR  120
EMTDYGHVEL APSASVRSTT S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-116701479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast09G242100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227322.12e-57ethylene-responsive transcription factor ERF003
TrEMBLI1J2V24e-56I1J2V2_BRADI; Uncharacterized protein
STRINGBRADI5G24700.17e-57(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-16ERF family protein